A selection of my programs is posted on my github
repo. In addition, here are a number
of programs from the pre-github era:
- alfy:
Alignment-Free local homologY
- bioBox: Tools
for Sequence Analysis
- bioinformer: Colorful software for
teaching Bioinformatics
- bwt: Interactive computation of
the Burrows-Wheeler Transform
- CITE: Confidence Intervals for Divergence Time Estimates
- coalator:
Interactive Drawing of Coalescent Trees
- drawWrightFisher:
Interactive Drawing of Lines of Descent under the Wright-Fisher Model of
Evolution
- drawGenealogy:
Interactive Drawing of Family Histories
- drawStrees:
Interactive Drawing of Generalized Suffix Tree
- hitchhiking:
Software for Simulating Selective Sweeps
- ir: Index of Repetitiveness, 7#7
- kr:
Efficient estimation of distances between pairs of genomes
- LIAN:
Testing Genome-Wide Linkage Equilibrium From Multilocus Data
- medMatch: Rapidly Generate
a Human Gene Index of Medline
- mlRho: Estimating the Population Mutation and Recombination Rates from Shotgun-sequenced Diploid Genomes
- neff:
Calculating the SNP-Effective Sample Size of an Alignment
- pid: Alignment-free Estimation
of Genetic Diversity
- rush: Recombination
detection Using SHustrings
- sampling:
Simulating haplotypes in non-equilibrium subdivided populations
- shulen:
Null Distribution of Shortest Unique Substring Lengths
- shustring:
Detect SHortest Unique SubSTRINGs ( = shustrings)
