Score E
Sequences producing significant alignments: (bits) Value
gi|13061528|gb|BG297657.1|BG297657 602395857F1 NIH_MGC_94 M... 1314 0.0
gi|4316530|gb|AI462500.1|AI462500 ub73e09.x1 Soares_mammary... 714 0.0
gi|10589299|gb|BE950633.1|BE950633 UI-M-CE0-aza-a-03-0-UI.s... 565 e-159
gi|3521213|gb|AI120889.1|AI120889 ub73e09.r1 Soares_mammary... 517 e-144
gi|11029344|gb|BF147949.1|BF147949 uw92b11.x1 Soares_mammar... 404 e-110
gi|10749600|gb|BF018268.1|BF018268 uw91g07.x1 Soares_mammar... 404 e-110
gi|10309391|gb|BE851052.1|BE851052 uw91g07.y1 Soares_mammar... 341 1e-91
gi|10309430|gb|BE851091.1|BE851091 uw92b11.y1 Soares_mammar... 335 8e-90
gi|9002608|dbj|BB301903.1|BB301903 BB301903 RIKEN full-leng... 329 5e-88
gi|8975651|dbj|BB278629.1|BB278629 BB278629 RIKEN full-leng... 321 1e-85
gi|8983309|dbj|BB282860.1|BB282860 BB282860 RIKEN full-leng... 216 5e-54
gi|13056261|gb|BG295045.1|BG295045 602392380F1 NIH_MGC_94 M... 111 2e-22
gi|13297674|gb|BG404226.1|BG404226 602420283F1 NIH_MGC_94 M... 42 0.17
gi|13149180|gb|BG342742.1|BG342742 602374563F1 NIH_MGC_94 M... 42 0.17
gi|13148981|gb|BG342543.1|BG342543 602374714F1 NIH_MGC_94 M... 42 0.17
gi|13063322|gb|BG298553.1|BG298553 602396937F1 NIH_MGC_94 M... 42 0.17
gi|13062517|gb|BG298242.1|BG298242 602396396F1 NIH_MGC_94 M... 42 0.17
gi|13062515|gb|BG298241.1|BG298241 602396395F1 NIH_MGC_94 M... 42 0.17
gi|13062367|gb|BG298167.1|BG298167 602396304F1 NIH_MGC_94 M... 42 0.17
gi|13060878|gb|BG297332.1|BG297332 602395456F1 NIH_MGC_94 M... 42 0.17
gi|13060866|gb|BG297326.1|BG297326 602395447F1 NIH_MGC_94 M... 42 0.17
gi|13060752|gb|BG297269.1|BG297269 602394980F1 NIH_MGC_94 M... 42 0.17
gi|13057815|gb|BG295809.1|BG295809 602393292F1 NIH_MGC_94 M... 42 0.17
gi|13056533|gb|BG295168.1|BG295168 602392438F1 NIH_MGC_94 M... 42 0.17
gi|13056062|gb|BG294829.1|BG294829 602391654F1 NIH_MGC_94 M... 42 0.17
gi|13054443|gb|BG294123.1|BG294123 602390988F1 NIH_MGC_94 M... 42 0.17
gi|13053895|gb|BG293849.1|BG293849 602390360F1 NIH_MGC_94 M... 42 0.17
gi|13053457|gb|BG293614.1|BG293614 602390274F1 NIH_MGC_94 M... 42 0.17
gi|13052427|gb|BG293051.1|BG293051 602389761F1 NIH_MGC_94 M... 42 0.17
gi|13052239|gb|BG292923.1|BG292923 602389564F1 NIH_MGC_94 M... 42 0.17
gi|12771872|gb|BG262056.1|BG262056 602373890F1 NIH_MGC_94 M... 42 0.17
gi|12771839|gb|BG262023.1|BG262023 602373856F1 NIH_MGC_94 M... 42 0.17
gi|12771537|gb|BG261617.1|BG261617 602373501F1 NIH_MGC_94 M... 42 0.17
gi|12771342|gb|BG261526.1|BG261526 602373279F1 NIH_MGC_94 M... 42 0.17
gi|13053967|gb|BG293885.1|BG293885 602391308F1 NIH_MGC_94 M... 40 0.69
gi|13051940|gb|BG292771.1|BG292771 602389455F1 NIH_MGC_94 M... 40 0.69
gi|7695369|gb|AW763430.1|AW763430 ur61a05.x1 NCI_CGAP_Mam3 ... 40 0.69
gi|4513146|gb|AI561801.1|AI561801 vv66g03.x1 Stratagene mou... 40 0.69
gi|2775930|gb|AA739124.1|AA739124 vv66g03.r1 Stratagene mou... 40 0.69
gi|2403847|gb|AA590467.1|AA590467 vm24b08.r1 Knowles Solter... 40 0.69
gi|2234426|gb|AA499459.1|AA499459 vi85g07.r1 Stratagene mou... 40 0.69
gi|1905102|gb|AA268331.1|AA268331 va39b12.r1 Soares mouse 3... 40 0.69
gi|1804072|gb|AA207541.1|AA207541 mv79c05.r1 GuayWoodford B... 40 0.69
gi|13057817|gb|BG295810.1|BG295810 602393293F1 NIH_MGC_94 M... 38 2.7
gi|11536365|gb|BF467182.1|BF467182 UI-M-CG0p-brp-f-07-0-UI.... 38 2.7
gi|11533904|gb|BF464721.1|BF464721 UI-M-CG0p-bqb-h-08-0-UI.... 38 2.7
gi|10077789|gb|BE690165.1|BE690165 uw65a04.y1 Soares_mammar... 38 2.7
gi|8916064|dbj|BB236516.1|BB236516 BB236516 RIKEN full-leng... 38 2.7
gi|8915331|dbj|BB235665.1|BB235665 BB235665 RIKEN full-leng... 38 2.7
gi|8872424|dbj|BB207471.1|BB207471 BB207471 RIKEN full-leng... 38 2.7
gi|8864810|dbj|BB199857.1|BB199857 BB199857 RIKEN full-leng... 38 2.7
gi|8766946|dbj|BB114378.1|BB114378 BB114378 RIKEN full-leng... 38 2.7
gi|6638385|gb|AW261569.1|AW261569 um88c10.x1 Sugano mouse k... 38 2.7
gi|5319380|dbj|AV133650.1|AV133650 AV133650 Mus musculus C5... 38 2.7
gi|4485343|gb|AI552980.1|AI552980 ve39a01.y1 Soares_mammary... 38 2.7
gi|4061900|gb|AI327471.1|AI327471 ma82b11.y1 Soares mouse p... 38 2.7
gi|4058370|gb|AI323941.1|AI323941 ma82b11.x1 Soares mouse p... 38 2.7
gi|2755869|gb|AA734202.1|AA734202 vv23c06.r1 Stratagene mou... 38 2.7
gi|2102184|gb|AA423368.1|AA423368 ve39a01.r1 Soares_mammary... 38 2.7
gi|1936774|gb|AA289243.1|AA289243 vc89g07.r1 Barstead MPLRB... 38 2.7
gi|1862486|gb|AA238282.1|AA238282 my34f10.r1 Barstead mouse... 38 2.7
gi|1537741|gb|W35837.1|W35837 ma82b11.r1 Soares mouse p3NMF... 38 2.7
Alignments
>gi|13061528|gb|BG297657.1|BG297657 602395857F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4507311 5'.
Length = 811
Score = 1314 bits (663), Expect = 0.0
Identities = 728/741 (98%), Gaps = 9/741 (1%)
Strand = Plus / Plus
Query: 23 cagagacagttttctacagccatggcccaaaggcttacaggtgaacagacactggaccac 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagacagttttctacagccatggtccaaaggcttacaggtgaacagacactggaccac 60
Query: 83 tatgaggatagcacccatgcaagcatcttcacctataccaacagcaacagcaccaaaggt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatgaggatagcacccatgcaagcatcttcacctataccaacagcaacagcaccaaaggt 120
Query: 143 ccctttgaaggccccaattatcacattgctcccaggtgggtgtaccacctcaccagcacc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccctttgaaggccccaattatcacattgctcccaggtgggtgtaccacctcaccagcacc 180
Query: 203 tggatgattcttgtggtcgttgcatctgtcttcactaatggacttgtgctggcagccacc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggatgattcttgtggtcgttgcatctgtcttcactaatggacttgtgctggcagccacc 240
Query: 263 atgagattcaagaagctgcgccatccactgaactggattctggtgaacttggcagttgct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgagattcaagaagctgcgccatccactgaactggattctggtgaacttggcagttgct 300
Query: 323 gacctagcagagaccattattgccagcactatcagtgttgtgaaccaaatctatggctac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacctagcagagaccattattgccagcactatcagtgttgtgaaccaaatctatggctac 360
Query: 383 ttcgttctgggacaccctctgtgtgtcattgaaggctacattgtctcattgtgtggaatc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcgttctgggacaccctctgtgtgtcattgaaggctacattgtctcattgtgtggaatc 420
Query: 443 acaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaagccc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaagccc 480
Query: 503 tttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgggtc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgggtc 540
Query: 563 tgggctgctatatggacggccccaccaatctttggttggagcaggtactggccttatggc 622
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 541 tgggctgctatatggacggccc--acaatc-ttggttggagcaggtactgg-cttatgg- 595
Query: 623 ctgaagacatcctgtggcccagacgtgttcagcggtacctcgtaccccggggttcagtct 682
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 596 ctgaagacatcctgtggcccagacgtgttcagcggta-ctcgtaccc--gggttcagtct 652
Query: 683 tatatgatggtcctcatggtcacgtgctgcatcttcccactcagcatcatcgtgctctgc 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tatatgatggtcctcatggtcacgtgctgcatcttcccactcagcatcatcgtgctctgg 712
Query: 743 tacctccaag-tgtggctggc 762
|| ||||||| ||||||||||
Sbjct: 713 taactccaagttgtggctggc 733
>gi|4316530|gb|AI462500.1|AI462500 ub73e09.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1383400 3' similar to gb:X54675_cds1 RED-SENSITIVE
OPSIN (HUMAN);.
Length = 620
Score = 714 bits (360), Expect = 0.0
Identities = 377/384 (98%)
Strand = Plus / Minus
Query: 440 atcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaag 561
Query: 500 ccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgg 501
Query: 560 gtctgggctgctatatggacggccccaccaatctttggttggagcaggtactggccttat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtctgggctgctatatggacggccccaccaatctttggttggagcaggtactggccttat 441
Query: 620 ggcctgaagacatcctgtggcccagacgtgttcagcggtacctcgtaccccggggttcag 679
||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 440 ggcctaaanacatcctgtggcccanacgtgttcancggtacctcgtaccccggggttcag 381
Query: 680 tcttatatgatggtcctcatggtcacgtgctgcatcttcccactcagcatcatcgtgctc 739
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 tcttatatgatggtcctcatggtcacgtgntgcatcttcccactcagcatcatcgtgctc 321
Query: 740 tgctacctccaagtgtggctggccatccgagcagtggcaaagcaacagaaagaatctgag 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 tgctacctccaagtgtggctggccatccgagcagtggcaaagcaacagaaagaatttgag 261
Query: 800 tccactcagaaggccgagaaggag 823
||| ||||||||||||||||||||
Sbjct: 260 tcccctcagaaggccgagaaggag 237
Score = 341 bits (172), Expect = 1e-91
Identities = 193/200 (96%)
Strand = Plus / Minus
Query: 1011 agtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaacttt 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 238 agtttcgaaactgcatcttacatctctttggaaaaaaggttgatgatagctttgaacttt 179
Query: 1071 ccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctgc 1130
||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||
Sbjct: 178 ccagcacctccaagacaaaagtttcatctgtcttttcagtgtcacctgcataaagtttgc 119
Query: 1131 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatcc 1190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 118 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttttcatctatcc 59
Query: 1191 ttgtaaaataaacataattt 1210
||||||||||||||||||||
Sbjct: 58 ttgtaaaataaacataattt 39
>gi|10589299|gb|BE950633.1|BE950633 UI-M-CE0-aza-a-03-0-UI.s1 NIH_BMAP_Ret3 Mus musculus cDNA clone
UI-M-CE0-aza-a-03-0-UI 3'.
Length = 321
Score = 565 bits (285), Expect = e-159
Identities = 291/293 (99%)
Strand = Plus / Minus
Query: 922 cttccaccctcttgtggcctccctaccatcctactttgccaaaagtgccactatctacaa 981
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cttccaccctcttgtggcctccgtaccatcgtactttgccaaaagtgccactatctacaa 262
Query: 982 ccccattatctatgtctttatgaaccggcagtttcgaaactgcatcttacatctctttgg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccattatctatgtctttatgaaccggcagtttcgaaactgcatcttacatctctttgg 202
Query: 1042 aaagaaggttgatgatagctctgaactttccagcacctccaagacagaagtctcatctgt 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaaggttgatgatagctctgaactttccagcacctccaagacagaagtctcatctgt 142
Query: 1102 ctcttcagtgtcacctgcataaagtctgcctccaacctgtcccatccatcaaagctttgg 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ctcttcagtgtcacctgcataaagtctgcctccaacctgtcccatccatcaaagctttgg 82
Query: 1162 ccatgttttacctcccttctcatctatccttgtaaaataaacataatttctcc 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ccatgttttacctcccttctcatctatccttgtaaaataaacataatttctcc 29
>gi|3521213|gb|AI120889.1|AI120889 ub73e09.r1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1383400 5' similar to gb:X54675_cds1 RED-SENSITIVE
OPSIN (HUMAN);.
Length = 349
Score = 517 bits (261), Expect = e-144
Identities = 325/341 (95%), Gaps = 4/341 (1%)
Strand = Plus / Plus
Query: 442 cacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaagcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgcaagcc 60
Query: 502 ctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgggt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcctgggt 120
Query: 562 ctgggctgctatatggacggccccaccaatctttggttggagcaggtactggccttatgg 621
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgggctgctatatggacggcccc-ccaatctttggttggagcaggtactggccttatgc 179
Query: 622 cctgaagacatcctgtggcccagacgtgttcagc-ggtacctcgtaccccggggttcagt 680
||| ||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 180 gctgcagacatcctgtgggccagacgtgttcagcgggtactcggtacccgggggttcagt 239
Query: 681 cttatatgatggtcctcatggtcacgtgctgcatcttcccactcagcatcatcgtgctct 740
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 cttatatgatgggtctcatggtcacgtgctgcatcctcccactcagcatcatcgtgctct 299
Query: 741 gctacctccaagtgtggctggccatcc-gagcagtggcaaa 780
|||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 300 gctaactccaagtgtggctgg-catccggagcagtggcaaa 339
>gi|11029344|gb|BF147949.1|BF147949 uw92b11.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:3469437 3' similar to SW:OPSG_MOUSE O35599
GREEN-SENSITIVE OPSIN ;.
Length = 570
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 1011 agtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaacttt 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaacttt 154
Query: 1071 ccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctgc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctgc 94
Query: 1131 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatcc 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatcc 34
Query: 1191 ttgtaaaataaacataatttctcc 1214
||||||||||||||||||||||||
Sbjct: 33 ttgtaaaataaacataatttctcc 10
Score = 341 bits (172), Expect = 1e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 437 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 373
Query: 497 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 313
Query: 557 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 261
Score = 101 bits (51), Expect = 2e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 773 gtggcaaagcaacagaaagaatctgagtccactcagaaggccgagaaggag 823
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtggcaaagcaacagaaagaatctgagtccactcagaaggccgagaaggag 212
>gi|10749600|gb|BF018268.1|BF018268 uw91g07.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:3469404 3' similar to SW:OPSG_MOUSE O35599
GREEN-SENSITIVE OPSIN ;.
Length = 531
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 1011 agtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaacttt 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaacttt 154
Query: 1071 ccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctgc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctgc 94
Query: 1131 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatcc 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatcc 34
Query: 1191 ttgtaaaataaacataatttctcc 1214
||||||||||||||||||||||||
Sbjct: 33 ttgtaaaataaacataatttctcc 10
Score = 341 bits (172), Expect = 1e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 437 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 373
Query: 497 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 313
Query: 557 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 261
Score = 101 bits (51), Expect = 2e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 773 gtggcaaagcaacagaaagaatctgagtccactcagaaggccgagaaggag 823
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtggcaaagcaacagaaagaatctgagtccactcagaaggccgagaaggag 212
>gi|10309391|gb|BE851052.1|BE851052 uw91g07.y1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:3469404 5' similar to SW:OPSG_MOUSE O35599
GREEN-SENSITIVE OPSIN ;.
Length = 491
Score = 341 bits (172), Expect = 1e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 437 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 377
Query: 497 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 437
Query: 557 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgggtctgggctgctatatggacggccccaccaatctttggttggagcaggt 489
>gi|10309430|gb|BE851091.1|BE851091 uw92b11.y1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:3469437 5' similar to SW:OPSH_ASTFA P22331
GREEN-SENSITIVE OPSIN 2 ;.
Length = 491
Score = 335 bits (169), Expect = 8e-90
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 437 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaatcacaggcctctggtccctggccatcatttcctgggagagatggctggtggtctgc 377
Query: 497 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagccctttggcaatgtgagatttgatgctaagctggccactgtgggaatcgtcttctcc 437
Query: 557 tgggtctgggctgctatatggacggccccaccaatctttggttggagca 605
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgggtctgggctgctatatggacggccccaccaatctttggttggagca 486
>gi|9002608|dbj|BB301903.1|BB301903 BB301903 RIKEN full-length enriched, adult male corpora quadrigemina
Mus musculus cDNA clone B230034A09 3' similar to AF011389
Mus musculus green cone pigment (GCP) mRNA.
Length = 292
Score = 329 bits (166), Expect = 5e-88
Identities = 217/234 (92%)
Strand = Plus / Plus
Query: 981 accccattatctatgtctttatgaaccggcagtttcgaaactgcatcttacatctctttg 1040
|||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 51 accccattatctatttctatatgaaccggcagtttcgcaactgcatcttacatctctttc 110
Query: 1041 gaaagaaggttgatgatagctctgaactttccagcacctccaagacagaagtctcatctg 1100
||||| |||||| ||||| ||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 111 gaaaggaggttgctgatacctctgcactttcccccacctcccagacagaagtctcatctt 170
Query: 1101 tctcttcagtgtcacctgcataaagtctgcctccaacctgtcccatccatcaaagctttg 1160
|||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 171 tctcttcagtttcacctgcataaaatttgcctccaacctgtcccatccttcaaagctttg 230
Query: 1161 gccatgttttacctcccttctcatctatccttgtaaaataaacataatttctcc 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cccatgttttacctcccttctcatctatccttgtaaaataaacataatttctcc 284
>gi|8975651|dbj|BB278629.1|BB278629 BB278629 RIKEN full-length enriched, adult retina Mus musculus cDNA
clone A930011P05 3' similar to AF011389 Mus musculus
green cone pigment (GCP) mRNA.
Length = 283
Score = 321 bits (162), Expect = 1e-85
Identities = 192/201 (95%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 1010 cagtttcgaaactgcatcttacatctctttggaaagaaggttgatgatagctctgaactt 1069
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 74 cagtttcgaaactgcttcttacatctntttggaaagaaggttgatgatagttctgaactt 133
Query: 1070 tccagcacctccaagacagaagtctcatctgtctcttcagtgtcacctgcataaagtctg 1129
|| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct: 134 tcaagcacctccaagacagaagtttcatct-tctcttcagtgtcacctgcataaattctg 192
Query: 1130 cctccaacctgtcccatccatcaaagctttggccatgttttacctcccttctcatctatc 1189
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 193 cctccaacctgtcccatccatcaaagctttgcccatgttttacctcccttttcatctatc 252
Query: 1190 cttgtaaaataaacataattt 1210
|||||||||||||||||||||
Sbjct: 253 cttgtaaaataaacataattt 273
Score = 56.0 bits (28), Expect = 1e-05
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 981 accccattatctatgtctttatgaaccggcag 1012
|||||||| |||||||||||||||||||||||
Sbjct: 28 accccattttctatgtctttatgaaccggcag 59
>gi|8983309|dbj|BB282860.1|BB282860 BB282860 RIKEN full-length enriched, adult retina Mus musculus cDNA
clone A930040M12 3' similar to AF011389 Mus musculus
green cone pigment (GCP) mRNA.
Length = 259
Score = 216 bits (109), Expect = 5e-54
Identities = 151/165 (91%)
Strand = Plus / Plus
Query: 1050 ttgatgatagctctgaactttccagcacctccaagacagaagtctcatctgtctcttcag 1109
|||||||||||| ||||||||||| ||| |||||||||||| | | |||| ||| |||||
Sbjct: 89 ttgatgatagctttgaactttccaccacttccaagacagaatttttatctttcttttcag 148
Query: 1110 tgtcacctgcataaagtctgcctccaacctgtcccatccatcaaagctttggccatgttt 1169
| ||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 149 tttcacctgcataaattctgcttccaacctttcccatccatcaaagctttgcccatgttt 208
Query: 1170 tacctcccttctcatctatccttgtaaaataaacataatttctcc 1214
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tacttcccttctcatctatccttgtaaaataaacataatttctcc 253
>gi|13056261|gb|BG295045.1|BG295045 602392380F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4504194 5'.
Length = 921
Score = 111 bits (56), Expect = 2e-22
Identities = 98/107 (91%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 1011 agtttcgaaa-ctgcatcttacatctctttgga-aagaaggttgatgatagctctg--aa 1066
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct: 665 agtttcgaaacctgcatcttacatctccttggacaagaaggttgatgatagctctggaac 724
Query: 1067 ctttccagcacctccaagacagaagtctcatctgtc-tcttcagtgt 1112
|||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct: 725 ctttccaggagctccaagacagaagtctcatctgtcatcttcagtgt 771
>gi|13297674|gb|BG404226.1|BG404226 602420283F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4527356 5'.
Length = 806
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 147 ccactcagaaggcagagaaggaagtcacccgcatggt 183
>gi|13149180|gb|BG342742.1|BG342742 602374563F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4482231 5'.
Length = 984
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 235 ccactcagaaggcagagaaggaagtcacccgcatggt 271
>gi|13148981|gb|BG342543.1|BG342543 602374714F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4482194 5'.
Length = 989
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 128 ccactcagaaggcagagaaggaagtcacccgcatggt 164
>gi|13063322|gb|BG298553.1|BG298553 602396937F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4511697 5'.
Length = 672
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 192 ccactcagaaggcagagaaggaagtcacccgcatggt 228
>gi|13062517|gb|BG298242.1|BG298242 602396396F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4508038 5'.
Length = 746
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 230 ccactcagaaggcagagaaggaagtcacccgcatggt 266
>gi|13062515|gb|BG298241.1|BG298241 602396395F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4507990 5'.
Length = 732
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 321 ccactcagaaggcagagaaggaagtcacccgcatggt 357
>gi|13062367|gb|BG298167.1|BG298167 602396304F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4507824 5'.
Length = 696
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 311 ccactcagaaggcagagaaggaagtcacccgcatggt 347
>gi|13060878|gb|BG297332.1|BG297332 602395456F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4507261 5'.
Length = 761
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 205 ccactcagaaggcagagaaggaagtcacccgcatggt 241
>gi|13060866|gb|BG297326.1|BG297326 602395447F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4507211 5'.
Length = 738
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 630 ccactcagaaggcagagaaggaagtcacccgcatggt 666
>gi|13060752|gb|BG297269.1|BG297269 602394980F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4506859 5'.
Length = 1053
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 33 ccactcagaaggcagagaaggaagtcacccgcatggt 69
>gi|13057815|gb|BG295809.1|BG295809 602393292F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4505134 5'.
Length = 682
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 362 ccactcagaaggcagagaaggaagtcacccgcatggt 398
>gi|13056533|gb|BG295168.1|BG295168 602392438F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4504448 5'.
Length = 616
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 31 ccactcagaaggcagagaaggaagtcacccgcatggt 67
>gi|13056062|gb|BG294829.1|BG294829 602391654F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4503684 5'.
Length = 936
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 246 ccactcagaaggcagagaaggaagtcacccgcatggt 282
>gi|13054443|gb|BG294123.1|BG294123 602390988F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4503021 5'.
Length = 718
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 186 ccactcagaaggcagagaaggaagtcacccgcatggt 222
>gi|13053895|gb|BG293849.1|BG293849 602390360F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4502078 5'.
Length = 759
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 228 ccactcagaaggcagagaaggaagtcacccgcatggt 264
>gi|13053457|gb|BG293614.1|BG293614 602390274F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4501987 5'.
Length = 837
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 510 ccactcagaaggcagagaaggaagtcacccgcatggt 546
>gi|13052427|gb|BG293051.1|BG293051 602389761F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4501719 5'.
Length = 1055
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 50 ccactcagaaggcagagaaggaagtcacccgcatggt 86
>gi|13052239|gb|BG292923.1|BG292923 602389564F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4501502 5'.
Length = 980
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 323 ccactcagaaggcagagaaggaagtcacccgcatggt 359
>gi|12771872|gb|BG262056.1|BG262056 602373890F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4481255 5'.
Length = 917
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 196 ccactcagaaggcagagaaggaagtcacccgcatggt 232
>gi|12771839|gb|BG262023.1|BG262023 602373856F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4481533 5'.
Length = 975
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 213 ccactcagaaggcagagaaggaagtcacccgcatggt 249
>gi|12771537|gb|BG261617.1|BG261617 602373501F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4480800 5'.
Length = 956
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 50 ccactcagaaggcagagaaggaagtcacccgcatggt 86
>gi|12771342|gb|BG261526.1|BG261526 602373279F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4481082 5'.
Length = 774
Score = 42.1 bits (21), Expect = 0.17
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatggt 837
||||||||||||| |||||||| || || ||||||||
Sbjct: 235 ccactcagaaggcagagaaggaagtcacccgcatggt 271
>gi|13053967|gb|BG293885.1|BG293885 602391308F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4503385 5'.
Length = 1068
Score = 40.1 bits (20), Expect = 0.69
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 801 ccactcagaaggccgagaaggaggtgacacgcatgg 836
||||||||||||| |||||||| || || |||||||
Sbjct: 649 ccactcagaaggcagagaaggaagtcacccgcatgg 684
>gi|13051940|gb|BG292771.1|BG292771 602389455F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4501453 5'.
Length = 1085
Score = 40.1 bits (20), Expect = 0.69
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 802 cactcagaaggccgagaaggaggtgacacgcatggt 837
|||||||||||| |||||||| || || ||||||||
Sbjct: 400 cactcagaaggcagagaaggaagtcacccgcatggt 435
>gi|7695369|gb|AW763430.1|AW763430 ur61a05.x1 NCI_CGAP_Mam3 Mus musculus cDNA clone IMAGE:3154736 3'
similar to gb:Z14044 M.musculus mRNA for
valosin-containing protein (MOUSE);.
Length = 603
Score = 40.1 bits (20), Expect = 0.69
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 731 atcgtgctctgctacctcca 750
||||||||||||||||||||
Sbjct: 456 atcgtgctctgctacctcca 475
>gi|4513146|gb|AI561801.1|AI561801 vv66g03.x1 Stratagene mouse skin (#937313) Mus musculus cDNA clone
IMAGE:1227412 3'.
Length = 415
Score = 40.1 bits (20), Expect = 0.69
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 926 caccctcttgtggcctccct 945
||||||||||||||||||||
Sbjct: 310 caccctcttgtggcctccct 329
>gi|2775930|gb|AA739124.1|AA739124 vv66g03.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone
IMAGE:1227412 5'.
Length = 376
Score = 40.1 bits (20), Expect = 0.69
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 926 caccctcttgtggcctccct 945
||||||||||||||||||||
Sbjct: 118 caccctcttgtggcctccct 99
>gi|2403847|gb|AA590467.1|AA590467 vm24b08.r1 Knowles Solter mouse blastocyst B1 Mus musculus cDNA
clone IMAGE:991095 5' similar to gb:X13752 Murine mRNA
for delta-aminolevulinate dehydratase (MOUSE);.
Length = 539
Score = 40.1 bits (20), Expect = 0.69
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 754 gtggctggccatccgagcagtggc 777
|||||||||| |||||||||||||
Sbjct: 285 gtggctggccctccgagcagtggc 308
>gi|2234426|gb|AA499459.1|AA499459 vi85g07.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone
IMAGE:919068 5' similar to gb:X13752 Murine mRNA for
delta-aminolevulinate dehydratase (MOUSE);.
Length = 535
Score = 40.1 bits (20), Expect = 0.69
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 754 gtggctggccatccgagcagtggc 777
|||||||||| |||||||||||||
Sbjct: 226 gtggctggccctccgagcagtggc 249
>gi|1905102|gb|AA268331.1|AA268331 va39b12.r1 Soares mouse 3NME12 5 Mus musculus cDNA clone
IMAGE:733727 5' similar to gb:X13752 Murine mRNA for
delta-aminolevulinate dehydratase (MOUSE);.
Length = 615
Score = 40.1 bits (20), Expect = 0.69
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 754 gtggctggccatccgagcagtggc 777
|||||||||| |||||||||||||
Sbjct: 376 gtggctggccctccgagcagtggc 399
>gi|1804072|gb|AA207541.1|AA207541 mv79c05.r1 GuayWoodford Beier mouse kidney day 7 Mus musculus cDNA
clone IMAGE:661256 5' similar to gb:X13752 Murine mRNA
for delta-aminolevulinate dehydratase (MOUSE);.
Length = 603
Score = 40.1 bits (20), Expect = 0.69
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 754 gtggctggccatccgagcagtggc 777
|||||||||| |||||||||||||
Sbjct: 222 gtggctggccctccgagcagtggc 245
>gi|13057817|gb|BG295810.1|BG295810 602393293F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:4505182 5'.
Length = 1114
Score = 38.2 bits (19), Expect = 2.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1093 ctcatctgtctcttcagtg 1111
|||||||||||||||||||
Sbjct: 468 ctcatctgtctcttcagtg 450
>gi|11536365|gb|BF467182.1|BF467182 UI-M-CG0p-brp-f-07-0-UI.s1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone
UI-M-CG0p-brp-f-07-0-UI 3'.
Length = 642
Score = 38.2 bits (19), Expect = 2.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1093 ctcatctgtctcttcagtg 1111
|||||||||||||||||||
Sbjct: 569 ctcatctgtctcttcagtg 587
>gi|11533904|gb|BF464721.1|BF464721 UI-M-CG0p-bqb-h-08-0-UI.s1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone
UI-M-CG0p-bqb-h-08-0-UI 3'.
Length = 590
Score = 38.2 bits (19), Expect = 2.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 119 accaacagcaacagcacca 137
|||||||||||||||||||
Sbjct: 530 accaacagcaacagcacca 548
>gi|10077789|gb|BE690165.1|BE690165 uw65a04.y1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:3466830 5'.
Length = 416
Score = 38.2 bits (19), Expect = 2.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 155 cccaattatcacattgctcccag 177
||||||| |||||||||||||||
Sbjct: 416 cccaattttcacattgctcccag 394
>gi|8916064|dbj|BB236516.1|BB236516 BB236516 RIKEN full-length enriched, 3 days neonate thymus Mus
musculus cDNA clone A630059L16 3' similar to M22562 Rat
soluble guanylate cyclase 70kd subunit mRNA.
Length = 324
Score = 38.2 bits (19), Expect = 2.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 711 gcatcttcccactcagcatcatc 733
|||| ||||||||||||||||||
Sbjct: 59 gcattttcccactcagcatcatc 81
>gi|8915331|dbj|BB235665.1|BB235665 BB235665 RIKEN full-length enriched, 3 days neonate thymus Mus
musculus cDNA clone A630055E09 3'.
Length = 327
Score = 38.2 bits (19), Expect = 2.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1194 taaaataaacataatttct 1212
|||||||||||||||||||
Sbjct: 304 taaaataaacataatttct 322
>gi|8872424|dbj|BB207471.1|BB207471 BB207471 RIKEN full-length enriched, 0 day neonate thymus Mus
musculus cDNA clone A430082E05 3'.
Length = 320
Score = 38.2 bits (19), Expect = 2.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1194 taaaataaacataatttct 1212
|||||||||||||||||||
Sbjct: 294 taaaataaacataatttct 312
Database: GenBank Mouse EST entries
Posted date: May 8, 2001 9:06 PM
Number of letters in database: 734,123,634
Number of sequences in database: 1,961,526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 584774
Number of Sequences: 1961526
Number of extensions: 584774
Number of successful extensions: 169192
Number of sequences better than 10.0: 63
length of query: 1220
length of database: 734,123,634
effective HSP length: 20
effective length of query: 1200
effective length of database: 694,893,114
effective search space: 833871736800
effective search space used: 833871736800
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
