mlRho version 2.9: Software for Estimating the Population
Mutation and Recombination Rates from Shotgun-Sequenced Diploid Genomes
mlRho
takes as input a file with assembled reads from a single
diploid individual and returns
maximum likelihood estimates of the population mutation rate,
, the sequencing error , the zygosity correlation,,
and the population recombination rate, [1]. Please consult the
documentation for further details.
Ciona intestinalis profiles [2].
- 1
-
B. Haubold, P. Pfaffelhuber, and M. Lynch.
mlRho: A program for estimating the population mutation and
recombination rates from shotgun-sequenced diploid genomes.
Molecular Ecology, 19:277-284, 2010.
- 2
-
J.H. Kim, M.S. Waterman, and L.M. Li.
Diploid genome reconstruction of Ciona intestinalis and
comparative analysis with Ciona savignyi.
Genome Res, 17(7):1101-1110, Jul 2007.
mlRho version 2.9: Software for Estimating the Population
Mutation and Recombination Rates from Shotgun-Sequenced Diploid Genomes
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2016-09-22