- 1
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D. Gusfield.
Algorithms on Strings, Trees, and Sequences: Computer Science
and Computational Biology.
Cambridge University Press, Cambridge, 1997.
- 2
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B. Haubold, F. Klötzl, L. Hellberg, D. Thompson, and M. Cavalar.
Fur: Find unique genomic regions for diagnostic PCR.
Bioinformatics, doi.org/10.1093/bioinformatics/btab059, 2021.
- 3
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B. Haubold, L. Krause, T. Horn, and P. Pfaffelhuber.
An alignment-free test for recombination.
Bioinformatics, 29:3121–3127, 2013.
- 4
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B. Haubold, J. Kroymann, A. Ratzka, T. Mitchell-Olds, and T. Wiehe.
Recombination and gene conversion in Arabidopsis thaliana.
Genetics, 161:1269–1278, 2002.
- 5
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B. Haubold and T. Wiehe.
Calculating the SNP-effective sample size from an alignment.
Bioinformatics, 18:36–38, 2002.
- 6
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R. R. Hudson.
Properties of a neutral allele model with intragenic recombination.
Theoretical Population Biology, 23:183–201, 1983.
- 7
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J. F. C. Kingman.
The coalescent.
Stochastic Processes and their Applications, 13:235–248, 1982.
- 8
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Fabian Klötzl and Bernhard Haubold.
Phylonium: fast estimation of evolutionary distances from large
samples of similar genomes.
Bioinformatics, 36:2040–46, 2020.
- 9
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M. Lynch, B. Haubold, P. Pfaffelhuber, and T. Maruki.
Inference of historical population-size changes with allele-frequency
data.
G3, 10:211–223, 2020.
- 10
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T. Städler, B. Haubold, C. Merino, W. Stephan, and P. Pfaffelhuber.
The impact of sampling schemes on the site frequency spectrum in
nonequilibrium subdivided populations.
Genetics, 182:205–216, 2009.
- 11
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The International SNP Map Working Group.
A map of human genome sequence variation containing 1.42 million
single nucleotide polymorphisms.
Nature, 409:928–933, 2001.
- 12
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E. Ukkonen.
On-line construction of suffix-trees.
Algorithmica, 14:249–260, 1995.
- 13
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G. A. Watterson.
On the number of segregating sites in genetical models without
recombination.
Theoretical Population Biology, 7:256–276, 1975.
