bioinformer v. 1.01: Software for Demonstrating Bioinformatics Concepts

Bernhard Haubold

The program bioinformer accompanies the book Bioinformatics; an Evolutionary Approach by Bernhard Haubold and Thomas Wiehe (2006, Birkhäuser). It contains demo programs on the following topics:

• Alignment
  • Protein Substitution Matrices
  • Number of Alignments
  • Pairwise Alignment
• Match
  • String Matching
  • Suffix Tree
  • Repeat Searching
  • Hash Table
  • Dotplot
• Probability
  • Hidden Markov Model
• Evolution
  • Phylogeny
  • Drift
  • Wright-Fisher
  • Coalescent

The book also contains tutorials on each one of these modules.

The software can be downloaded from here.